PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000027G2350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 380aa    MW: 41129 Da    PI: 5.1083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000027G2350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18116166155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y G+r+++ +g+W+AeIrdp++     r++lg+f t+e+Aa+a++a ++k++g
  PH01000027G2350 116 SPYMGIRQRP-WGKWAAEIRDPRK---GLRVWLGTFNTPEDAARAYDAEARKIRG 166
                      6799******.**********954...3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-21116175IPR016177DNA-binding domain
PROSITE profilePS5103222.774117174IPR001471AP2/ERF domain
SMARTSM003809.4E-35117180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-31118176IPR001471AP2/ERF domain
CDDcd000184.04E-31118175No hitNo description
PfamPF008471.6E-10118166IPR001471AP2/ERF domain
PRINTSPR003678.7E-10118129IPR001471AP2/ERF domain
PRINTSPR003678.7E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCGIQIISGI VKEPMDSIPT NKGLKHSQIH LTTRGTSAPK RVKMLSEDEE DFEAEFQAFS  60
KTFDEEEGNG NLTALYSCGT NVLDVPLPLP GKDGMMTPKP VQFGPADKMV KRKRKSPYMG  120
IRQRPWGKWA AEIRDPRKGL RVWLGTFNTP EDAARAYDAE ARKIRGKKAK VNFPEEALSI  180
AAVTVPKPIV VAKPAMLAPT EQLNTSLSMS FVNHANNGLL SMMNFSGNNA PFIPAMSFGF  240
LTSEKPHVPD QNIFMFRPFD IRLGNAASLD ASAFFAPNTD VLGNNVPAFD EIPNMLRSND  300
GFGVPVLGNG MATLPQDLTI IDAVMNPNLP TLQEIIDGPL PSFLQADVSE NVASDSSENV  360
ASDSSLLNIG DLLFAGGTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21118174360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-25related to AP2 2